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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … of countering multiple attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR … dubbed these viruses Altivir, finding them in three of the four subsurface ecosystems known to host Altiarchaea. The …
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Frederik Schulz
Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His research … academic achievements (2008) … Education … Selected Publications … Awards and Service …
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Ancient Algae Reveal Secrets of Plant Evolution
Research uncovers the genetic foundations that helped plants … Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which were isolated from …
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Genomes of Three Methylotrophs from a Single Niche Reveal the Genetic and Metabolic Divergence of the Methylophilaceae
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Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons … And, it’s an opportunity to contribute to the rapidly expanding field of bioinformatics. When Lawrence embarked on … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Learning to Look
Machine learning approach significantly expands inovirus … are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection cycle. “We’re not … Roux. “The machine learning approach allows you to quickly scale up once you’ve found the right features that you can …
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JGI Workshop at SIMB NP Meeting
Jan. 7: New Capabilities to Study Secondary Metabolism   … a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from …
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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after … to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By connecting …
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Forming Scientific Connections and Building Community
… pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome … Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein Bendall : “It’s great meeting … “ Investigating metabolic network of symbiosis using genome-scale metabolic models ” Pedro Antonio Perez Ferrer : “I …
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Draft Genome Sequences of Three Strains of a Novel Rhizobiales Species Isolated from Forest Soil
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Ray Turner Completes Last Tour of Lab Duty at JGI
For the last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s … to Ray and most of the rest of the 200-plus Zoom participants. While the virtual mic shifted to Ray for his …
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