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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically … Institute.  The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short … editing is being advanced as a potential therapy for both genetic and complex disease. Finally, gene editing is being …
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UC Merced Interns Reflect on Their JGI Summer Projects
… Over the course of eight weeks this past summer, 10 students from UC Merced … develop presentation skills as well as build their network in the field of genomics and scientific research. The topics … using natural language processing techniques to categorize genetic information. Learn more about their work here in a …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data … to v13. Why is it necessary to retire Phytozome v12? The codebase for Phytozome v12 was first deployed (as the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Training the Next Generation of Talent
… New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy … I’ll take that knowledge back with me.” Now a second-year evolutionary biology student in David Ardell’s lab, he also …
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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat … The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest their last leafy meal. In their evolutionary history, these fungi branched off early from …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI … are at fending off the infection, and how long this evolutionary arms race has been going on.  Answering these … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
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Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for … sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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Plant Pan-Genomics Comes of Age
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Getting to the core of the gut microbiome
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse … gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … With the help of this information, the researchers found evolutionary relationships between methanogenesis, …
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