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AmiGO: online access to ontology and annotation data
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MAGI: A Method for Metabolite Annotation and Gene Integration
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid … as input. Data analysis Q:  What types of analysis support does JGI provide for DNA modification detection? A:  DNA … metagenomes as a custom analysis, i.e. is not part of the standard analysis pipeline but can be done on request by the …
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Fungal & Algal Program User Advisory Committee
… on the effective management and strategic objectives of the Program. The Committee serves as the Program's key … and scientific relevance and quality. The Committee does not perform management functions nor does it direct the Programs’ …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of … interactions in microbial systems. Through a 2021 DOE Early Career Research Program, Dr. Roux established and …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to … global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released its newest … and biomanufacturing. Data and connectivity theme. Standardizing and streamlining the JGI’s data systems and …
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Expanding Virophage Diversity
… Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the … & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able …
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Identification of novel biomass‐degrading enzymes from genomic dark matter: Populating genomic sequence space with functional annotation
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Resequencing and annotation of the Nostoc punctiforme ATTC 29133 genome: facilitating biofuel and high-value chemical production
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on … and one of the first students to participate in the DOE Joint Genome Institute (JGI)-UC Merced internship … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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DAP-seq Drives Robust Mapping of Gene Regulation
… plant lineages. Aligning with U.S. Department of Energy (DOE) interests, this advancement holds the potential to expand opportunities for bioenergy and bioengineering applications. “We worked … Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most … in our immediate microbiome. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Joint Genome Institute (https:// ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the …
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