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A Complex Confection Decoded: Sugarcane Reference Genome
… genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the … most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … that durable resistance to brown rust disease caused by the fungus,  Puccinia melanocephala . This plant pathogen used …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials … PhD, Microbiology and Cell Science, University of Florida NIH Postdoctoral Researcher, UCLA … Journal Experimental Botany, 2022 – present University of Florida MCS Advisory Council, 2022 – present Alumni …
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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat … The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … That work was done in collaboration with the Environmental Molecular Sciences Laboratory (EMSL), a DOE Office of …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … lab at UC Berkeley seeks other enzymes in the CRISPR-Cas system. For the past few years they have partnered with … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Workforce Development & Education Outreach
… Outreach at JGI takes many forms: We offer internship opportunities through working directly with … JGI’s role in enabling complex biological and environmental systems research.  … The JGI and UC Merced have had a long-standing internship partnership that started in the summer of 2014. …
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Understanding Wildfire Recovery, Starting in Soil
… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … within the soil. To get a clearer picture of how burned ecosystems return to health, researchers have taken a look at … Service, New Mexico State University, the Environmental Molecular Sciences Laboratory and the U.S. Department of …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 Annual Meeting . The … — From McClintock to Pangenomes Susan Wessler is plant molecular biologist and geneticist and currently a … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a … genome science capabilities to support BER's mission of achieving a predictive understanding of complex biological, earth, and environmental systems for energy and infrastructure security. In …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated in internships at the DOE Joint … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… A special issue of Synthetic Biology celebrates research enabled by the JGI … more than 10 papers, including two Nature Plants publications, in five years, have come out of the … trapped inside are now, still functional, in a kind of biomolecular soup. The soup permits researchers to quickly test …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to … DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have … but then moves out of the cell structure into a cell-free system. The work complements efforts to further develop …
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