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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … a better handle on the gene function helps identify the molecular targets for plant improvement. Surprisingly, about …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have … at over 180 organizations in 29 U.S. states and 35 countries. (Graphic: Neil Byers) The JGI launched the … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … the impact of this tiny, single-celled organism as a model system. “People name genes based on similarity to the Chlamy …
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on what the next five years of innovation …
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David Goodstein
… focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to … Project, he began developing larger comparative genomic systems as the JGI’s eukaryote research efforts expanded to … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a method that allows researchers … ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … has already demonstrated CRAGE as a versatile engineering system that allows scientists to conduct genome-wide screens …
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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … PLoS Biology 21, e3002083 Roux et al., 2021. Ecology and molecular targets of hypermutation in the global microbiome. … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the … nutrient cycling that evolved separately from other similar systems, and offers new clues into a unique environment in …
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Yasuo Yoshikuni
Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission … Review committee member of International Journal of Molecular Sciences and Frontiers in Chemical Engineering … DNA Synthesis Science Program … Education … Selected Publications … Awards and Honors …
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Graduate Students Get Thesis Research Opportunity at the JGI
Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program … Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s lab at … Structure and Methane Production in California’s Canal System,” she will work with Susannah Tringe, JGI’s User …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have … or not you planned it, viruses are most likely in your system and in your data, and they’re probably influencing … from different ecosystems all over the world, including 3,908 isolate reference DNA viruses and 264,413 …
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