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JGI on the 2021 Highly Cited Researchers List
… at the JGI! They are among those recognized by Clarivate Analytics for demonstrating “significant influence in their chosen field or fields through the publication of multiple highly cited papers during the last …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. …
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Understanding Wildfire Recovery, Starting in Soil
… a wildfire. The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for … published in Nature Microbiology , went a step further, using both DNA and messenger RNA (mRNA) sequencing to …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. … populations respond to virus infections, researchers are using Altiarchaea as a model system to study virus-host …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to … The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … of Genomic Sciences and Policy (for DNA sequencing and assembly); by a three-year subcontract to DA, FL, and FD …
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High Throughput Phosphoglycolate Phosphatase Activity Assay Using Crude Leaf Extract and Recombinant Enzyme to Determine Kinetic Parameters Km and Vmax Using a Microplate Reader
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Fungal & Algal Program
Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and biogeochemistry. The program’s focus is on large-scale sequencing efforts that survey the vast phylogenetic … program seeks to expand our understanding of algal biology using genomics and multi-omics by working with research labs …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the “chytrids”).  A … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … were then sent to the JGI for whole genome sequencing using the Illumina platform. Unfortunately, both the DNA and …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 times … conditions, or it could couple the two metabolisms by using sulfite to oxidize methane and hydrogen. McKay …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome Institute hosted … Merced Internship Program was brimming with excitement and determination as they came onsite. From data carpentry … Hualan Liu, Building Expression Host in Bacilli Class using CRAGE Technology Emerald Nash and mentor Jonelle …
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De novo Nanopore read quality improvement using deep learning
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Rationale for reconsidering current regulations restricting use of hybrids in orange juice
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