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Boosting Small Molecule Production in Super “Soup”
… environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to make products such as proteins, … senior authors. “But this has been done most commonly in bacterial-based systems, and so one of the things that I …
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1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
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Biotech Partners Summer Intern Co-Authors NAR Paper
… program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. …
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Tanja Woyke
Analytics 2020 van Niel International Prize for Studies in Bacterial Systematics 2020 Elected fellowship in the … and a metagenome- assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology 35, 725-731. Mukherjee et al. … User Programs … Education … Awards and Service … Selected Publications …
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Yasuo Yoshikuni
Science Program since 2015. The mission of this program is to harness the power of DNA synthesis, strain engineering, … of secondary metabolite biosynthetic gene clusters in bacteria, Cell Chemical Biology , 2022 … R&D100 Award … … DNA Synthesis Science Program … Education … Selected Publications … Awards and Honors …
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Niche differentiation of bacteria and fungi in carbon and nitrogen cycling of different habitats in a temperate coniferous forest: A metaproteomic approach
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Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria
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Horizontal gene transfer of the Mer operon is associated with large effects on the transcriptome and increased tolerance to mercury in nitrogen-fixing bacteria
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Expanding Virophage Diversity
Genome Institute (JGI), a DOE Office of Science facility, have increased the number of known high quality virophage … Virus)—for the virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, … to be complete genomes, and their discovery has extended the possible virophage genome size range from …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and … complex switchgrass genome. The reference genome built off more than a decade of work; as sequencing technologies …
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Dan Rokhsar
Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational … applicable to the diverse eukaryotic species, which they have applied and refined in the sequencing and evolutionary … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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A compendium of bacterial and archaeal single-cell amplified genomes from oxygen deficient marine waters
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