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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop … discoverability and accessibility are critical requirements for amplifying the JGI’s impact. Data generated from a … Download plant, algal, fungal and microbial genomes and metagenomes — …
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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JGI Early Career Researchers Featured in mSystems Special Issue
… In one article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … in an environmental sample beyond the tried-and-true method of traditional shotgun metagenomics. One approach … sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was …
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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Quantitative DNA Stable Isotope Probing Identifies Active Microorganisms Assimilating Volatile Fatty Acids in Full-Scale Enhanced Biological Phosphorus Removal Processes
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… National Laboratory (Berkeley Lab) marked the visit of an esteemed interdisciplinary delegation from the University … from the ACTIVE SITES Research Center (ACSI), the Centre for Water and Environmental Research (ZWU) of the University … to small individual workshops. Of common interest is the method development to study active sites or single cells in …
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Ancient Algae Reveal Secrets of Plant Evolution
… Research uncovers the genetic foundations that helped plants conquer land over 600 million years ago. The Science By … of how plants adapted to terrestrial life paves the way for innovations in sustainable agriculture and clean energy. … of plant evolution and could lead to advancements in improving plant resilience and productivity. The algal …
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Axel Visel
… the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. … applied novel computational and experimental sequence-based methods for elucidating the gene regulatory landscape of …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like … draws on the strengths of multiple virus-host prediction methods. In building this program,  described in Plos …
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Four Researchers Join JGI User Executive Committee
… have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user … Bik of the University of Georgia, Greg Bonito of Michigan State University, Jonathan Eisen of the University of California, Davis, and Michael Köpke of Lanzatech are the latest …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… long-term open access ecological data to better understand how U.S. ecosystems are changing.  Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  … become public as well? A:  Currently NEON doesn’t have a method for hosting that data. NEON recommends you host your …
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High Throughput Phosphoglycolate Phosphatase Activity Assay Using Crude Leaf Extract and Recombinant Enzyme to Determine Kinetic Parameters Km and Vmax Using a Microplate Reader
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