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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San … and how you can use the KBase system to accelerate your plant genomics research. Click here to download a list of …
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JGI Workshops at PAG
… breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, is rising. The purpose of this Workshop is to illustrate the expansion of this field and bring it to the attention of the wider genomics community. Jan. 13 workshop: BER Plant Genomic Science In this workshop, we will present …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … cannot be cultivated under laboratory conditions, their genomes can’t be sequenced using traditional approaches. …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to advance foundational … the bioeconomy. Functional diversity theme. Reading the genomes of individual organisms or environmental DNA, and … the JGI’s expertise to grow in areas such as developing pathogen-agnostic detection and prediction strategies for …
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Extracting the Secrets of Secondary Metabolites
… Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been limited due … edits affect functionality.  CRAGE allows for the transplanting of these BGCs from one organism into an alternate … applications for pest control and understanding how the pathogen uses insects for fuel.  The impact of the pairing …
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Team Science Reveals Important Protein in Poplar
… bioenergy crops The Science Scientists at Brookhaven National Laboratory (BNL) led a team that  identified a protein , PtrbHLH011, within poplar involved in plant growth, lignin production, and disease resistance.  … the “DOE Tree,” poplar is considered one of the  Flagship Plants for the U.S. Department of Energy (DOE) Joint Genome …
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Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments  
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint … 8. Q:  Related to Jim Moran’s talk, how long do plants need to be placed in a 13 CO2 chamber for sufficient … labeling? A:  If you’re looking for the label in the plant, it could be as short as 24 hours.  If you’re looking …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven … nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside mitochondria, the … mitochondrial annotations. Summary Mitochondrial genomes carry the genes responsible for oxidative …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
… To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone Health) and Leslie Mitchell (Neochromosome) have worked … to replace yeast’s native chromosomes with synthetic versions. This project has turned out to be an international …
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Microbial Genomics & Metagenomics (MGM) Workshop
… Registration has closed.  The U.S. Department of Energy (DOE) Joint … Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: … designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for …
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Natural Prodcast Episode 9: Roger Linington
… back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser University in British Columbia, … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to … This episode features our conversation with Roger Linington , from Simon Fraser …
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