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Project Management Office
… of samples for sequencing, or the submission of sequencing data for synthesis – the DOE requires that all work …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… suggests, there is metal in the hills, and it has legacy mining that goes back more than 100 years. And in particular, there’s an inflow from the mining activities upstream and downstream of the Arkansas. …
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Single Cell Research Group
… high value to establish models and hypotheses, experimental data is critical to further test such hypotheses. In …
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What Happens Underground Influences Global Nutrient Cycles
… conditions. The team aims to functionally link gene families to photosynthesis and discover gene functions that … McDermott and his colleagues are interested in determining how soil moisture influences the soil microbiome and … Tfaily of the University of Arizona. Her team aims to use data from an interdisciplinary field campaign taking place …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… call recommended including plans to analyze and distribute data through the  DOE Systems Knowledgebase (KBase) , a free, open source data science platform that allows users to explore data and … thrive in environments including hot springs and acid mining sites, traits that might have biotechnological …
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Supporting Global Research into Actinomycetes
… user-available API’s offer a space to not just store data, but for the community to discuss those data and make publicly-visible comments. Its purpose is to … studying actinobacteria to share information and data. The filamentous actinobacteria are of particular …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… with excitement and determination as they came onsite. From data carpentry to science communications, their schedules … Stamatis, Porting XML/Python Based Quality Control to Database/Java Based Process in Gold Sandra Hernandez … and mentor Miguel Romero, Classification and Analysis of Eukaryotic MAGs from Novel Taxa Christopher Bivins and …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – has … the context at a microscale is really what counts in determining our ability to understand and then predict and … work here . Edward Holmes, University of Sydney Using protein structures to assess scope of the virosphere Keynote …
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Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus
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From Competition to Cooperation
… analyzed 135 fungal genomes representing major fungal families, including those for which there were previously no … generated by the JGI more than a decade ago. Having these datasets will assist researchers in moving toward functional … Datasets …
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UC Merced Interns Reflect on Their JGI Summer Projects
… worked on ranged far and wide — from implementing new data visualization tools, to using natural language …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US … Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering … The 3.8 trillion bases or Terabases of sequencing data, along with geochemical and geospatial measurements …
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