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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation
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Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and Japan
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Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H2-oxidation activity measured in three soils exposed to H2
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JGI Welcomes New UEC Members
University of Massachusetts-Amherst, who represent the scientific areas of plant genomics, DNA synthesis and …
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Honey Bee Gut Microbiota Divvy Up Dinner
Now, an international team of researchers has identified the major metabolic roles of constituent microbes, … pollen’s pectin and hemicellulose are degraded mainly by just two clades:  Gilliamella,  which mostly resides in the … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Accelerating Metagenomics Discoveries with Deep Learning
… such as BLAST and hidden Markov models (HMMs), “You just compute the distance between two vectors,” said Sevim.  … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… all major evolutionary lineages in the land plant tree of life. Ultimately, the resulting comparative … can inform the efficient production of plant-based biofuels and bioproducts.  Summary A recent paper published in … for 85.2% of the C-fern assembly. While they did identify a couple WGD events, these events could not fully …
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From Textbook to Real World Applications
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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The leucine-rich repeats in allelic barley MLA immune receptors define specificity towards sequence-unrelated powdery mildew avirulence effectors with a predicted common RNase-like fold
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Marine Microbe Contains Multitudes
… with different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific … ways of living. The Impact Microbes help regulate the global carbon cycle — fixing, transforming, and respiring … namely the 16S ribosomal RNA (rRNA) gene, to mark or identify microbial species. All SAR324 have very closely related …
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