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Making a Lichen Together
… Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) participants. One … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and his team at the JGI contributed to annotation of the genomes, available …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. The sequences … in part by grants from the Paul Allen Frontiers Group, the National Science Foundation Graduate Research Fellowships and …
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately identify … approach. The tool was employed to build version 4 of the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 … Genome Institute (https://ror.org/04xm1d337), and the National Energy Research Scientific Computing Center (NERSC) …
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Better Genome Editing for Bioenergy
… is a powerful, high-throughput gene-editing tool that can help scientists engineer organisms for bioenergy … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica … negative if the gene is actually essential. Through the JGI’s  Community Science Program , the scientists thus set …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science … organisms (symbionts) are transmitted between host generations, researchers investigated the role that bacteria … and experimented with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild populations … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the way to seed but prevent the seeds from falling,” said JGI Plant Program head Jeremy Schmutz , who is also a …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… In this short video, UC Merced undergraduate and graduate students share how their summer internship … Hear more about what they learned from working with their JGI mentors, what challenges they overcame, and what new … school.  The interns from this cohort and their respective JGI mentors are: Ruoxi Zhao and mentor Margot Bezrutczyk …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Nature Communications on June 17 , 2022, was conducted by JGI Director Nigel Mouncey and research scientist Hiroshi …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… more broadly, land plant evolution. Recent findings in Ceratopteris richardii show a long history of dynamic evolution … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … ( Learn more about OGG in  this episode of to the JGI podcast Genome Insider . ) Summary A recent paper …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available … and data  are publicly available through MycoCosm , the JGI’s web portal for fungal genome data.   The Impact This … the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231. …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… common images in many regions due to more extreme weather events such as heat waves, droughts and floods. The … and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … crops. For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be a Flagship Plant. By …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in his backyard in … students to participate in the DOE Joint Genome Institute (JGI)-UC Merced internship program, Lawrence is now a …
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