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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial genomes. … be engineered. “Piloting access to this emerging technology with JGI users will enable us to assess CRAGE’s impact, … microbial communities to take advantage of their joint metabolisms. Because, together, microbes can be used to …
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Viruses Reprogram Cells into Different Virocells
State University and the University of Michigan studying how virus infections cause significant metabolic changes in marine microbes, the answer is no. They refer to the infected microbial cells as virocells, a change in name first described in 2011 which reflects the metabolic changes they’ve undergone. The …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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Introducing New Members of the JGI User Executive Committee
The JGI welcomes three new members to the JGI User Executive Committee (UEC) : Roland … on the UEC. Hatzenpichler, who studies sediment-dwelling archaea, expressed his interest in giving a voice to JGI …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, … Binghamton “studying polyploids and transposon evolution, expanding on this kind of analysis in more species, as well …
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Lytic archaeal viruses infect abundant primary producers in Earth’s crust
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Brockarchaeota, a novel archaeal phylum with unique and versatile carbon cycling pathways
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Culexarchaeia, a novel archaeal class of anaerobic generalists inhabiting geothermal environments
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Busting the Unbreakable Lignin
New evidence shows anaerobic fungi can degrade the hardiest of plant …   The Science There are three main ingredients to tackle when it comes to breaking down a plant for energy: Cellulose, hemicellulose and lignin, …
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Learning to Look
… approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to look for … in size and function to those in typical bacterial or archaeal genomes, the sequence is most likely not an … phyla across virtually every ecosystem.” By significantly expanding the known diversity of these viruses, genomic …
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Visualizing in situ translational activity for identifying and sorting slow-growing archaeal−bacterial consortia
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Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens
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