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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the … By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, this work … This research was supported by the NSF awards DEB- 1456588 to D.H. and …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the … Department of Energy (DOE) Joint Genome Institute (JGI) has released its newest 5-Year Strategic Plan: Innovating … along multiple avenues, including agriculture, climate modeling, novel bioproducts, and environmental …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from … the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … to tree health and carbon storage — skills that matter increasingly as the climate warms. However, these are complicated …
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The fungus that made itself at home
… Retracing how the dry rot Serpula lacrymans adapted to a new … so destructive in houses. A study involving six brown rot fungi reveals the genomic changes Serpula lacrymans has undergone in adapting to manmade environments. The Impact … This research was supported by the University of Oslo and Norwegian …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted several UC Merced students this past summer. This year’s cohort for the JGI-UC Merced … together on predicting the level of photosynthesis in a model green alga called Chlamydomonas reinhardtii. We’re …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in … but then moves out of the cell structure into a cell-free system. The work complements efforts to further develop … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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Exploring Polymorphisms Created by Transposable Elements
… My project at the Joint Genome Institute (JGI) was to measure the … transposable elements (TEs) contributed to in the grass model species Brachypodium hybridum . …
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Forming Scientific Connections and Building Community
… pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome … say about their experiences and what they’ll take with them as they go forward in their careers.   Listed below are the … gene cluster annotation by leveraging a large genomic model ” Leonel Gonzalez : “It’s been great having been able …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been … a novel phylum-level lineage of archaea with at least two major subgroups dubbed Marsarchaeota. The Impact … number of biotechnological applications. Molecular biology has benefited from heat-stable enzymes derived from …
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Natural Prodcast Episode 18: A CSP Primer
… DAN UDWARY: It’s been a while, but Natural Prodcast is back … focus within BER anymore. We really focus on terrestrial ecosystems, but we work in coastal environments, brackish … Episode Transcript … The main page for information about CSPs JGI’s Data Release Policy A statement on DOE Mission relevance If you have …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in … but then moves out of the cell structure into a cell-free system. The work complements efforts to further develop … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI … of complex biological, earth, and environmental systems for energy and infrastructure security. In complement to the Community Science …
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