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Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
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Dealing with Drought: Uncovering Sorghum’s Secrets
… genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in … the plants at the same time each week over the full life cycle of the plant. The first year’s gene expression results … were subjected to one of three conditions during their lifecycles. In the pre-flowering drought condition, no water was …
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Uncovering Novel Genomes from Earth’s Microbiomes
… metabolites for multiple applications. Despite advances in sequencing technologies and computational methods in the … the roles of microorganisms in regulating nutrient cycles, as well as gaining insights into potential … agricultural soils, human- and animal-host associated, and ocean and other aquatic environments – that’s pretty …
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Predominant Acidilobus-Like Populations from Geothermal Environments in Yellowstone National Park Exhibit Similar Metabolic Potential in Different Hypoxic Microbial Communities
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of life’s genetic blueprint has … long been a significant challenge in genomics. Enter GenomeOcean, a powerful generative model  now available to the …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome … methylation of the base cytosine at the 5th position on its carbon ring, or 5mC. In many organisms, 5mC is an important …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced … how mycorrhizal fungi play an integral role in soil carbon storage. Summary There are three types of fungal … The project was funded by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental … provide insights into the nutrients that are being used and cycled in different environments. It also shows how … ecosystems to better understand how nutrients are used and cycled. Additionally, it can show how environmental …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … Clostridium autoethanogenum. The microbe can utilize carbon oxides, including the greenhouse gas carbon dioxide, to make valuable chemicals, such as ethanol …
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Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park
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Refining the Process of Identifying Algae Biotechnology Candidates
… to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these algae in a container with access to sunlight, water and carbon dioxide so they can grow, and then harvest for use as … was supported by the Bioenergy Technology Office (BETO) within the Department of Energy’s Office of Energy Efficiency …
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Learning to Look
… Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … single-stranded DNA genomes and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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