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FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
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How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?
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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and … and Metagenomes Program since 2011. Prior to joining the DOE Joint Genome Institute, Dr. Kyrpides led the development …
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Fungal & Algal Program
… the genomes of these organisms, the program investigates the biological mechanisms that enable fungi and algae to play a vital role in carbon cycling, biodegradation and biogeochemistry. This research helps translate …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
Register here Book your stay at the conference venue This inaugural event will bring … and disciplines who are developing and applying laboratory ecosystems to help transition microbiome science from largely observational to reproducible mechanistic studies.  This …
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Boosting Small Molecule Production in Super “Soup”
Do metabolic pathways from engineered yeasts still work in cell-free … Opportunity Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence …
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Waiting to Respire
Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy … Program head Tanja Woyke of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and research scientist …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… some of their most important functions. Even in the chilly waters of Antarctica, tiny ocean-dwellers called … working with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence …
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Forming Scientific Connections and Building Community
… experiences. This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven graduate students from UC Merced through …
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Neha Varghese
Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… common images in many regions due to more extreme weather events such as heat waves, droughts and floods. The … U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence … a staple food in their diet, and the Department of Energy (DOE) also considers this to be a candidate bioenergy crop …
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