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Characterizing Communities: JGI Announces Latest CSP Portfolio
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted … accepted through JGI’s calls. Nearly 200 Terabases of data are expected to be generated for the accepted … or by allowing the generation of preliminary data for a larger study.” … The U.S. Department of Energy …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… to make sure the goals, experimental design, and plan for data utilization are clear. Contact JGI staff for feedback … a proposal. Describe in detail what you will do with the data! Ideally, you or someone on your team will have … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Sequencing Technologies
… to enable biological discovery by the JGI and external DOE users. Adopting the latest  sequencing technologies has … the JGI’s genomic capabilities are ready and applicable to users.  … Sequencing Technologies Lead …
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How Filamentous Fungi Sense Food
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … genes. This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently … (DOE) Joint Genome Institute, a DOE Office of Science User Facility, was supported by the Office of Science of the …
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University of California, Merced Internship Program
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A Collaboration to Improve Plant Genome Annotations Across Species
… of Energy (DOE) Joint Genome Institute (JGI)*, a national user facility located at Lawrence Berkeley National … to link experimental evidence across species. Centralized databases with large-scale transcriptome projects such as … is an updateable resource. To demonstrate that, we included datasets from two species, one of which is sweet sorghum Rio …
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Rex Malmstrom
… a similar single-cell genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His … also carries out custom preparative work for difficult user projects, including those that require fluorescence …
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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Nikos Kyrpides
… focus on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for … analysis, as well as mining and visualization of big data. … BA in Biology, Aristotle University of Thessaloniki, …
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JGI Welcomes New UEC Members
The JGI User Executive Committee (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their access to technical capabilities JGI offers, …
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Anna Ratner
… is working on the display and visualization of large omics data. …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst … find 13 additional predicted viral  genomes . The team dubbed these viruses Altivir, finding them in three of the …
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