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John Vogel
… 2018-present Member, EcoFAB steering committee 2014-present …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… available through the  Community Science Program (CSP) . This includes mass spectrometry-based measurements of … secondary metabolites from plants, microorganisms, and environmental samples using targeted and untargeted approaches. … . Q:  Are applicants outside of JGI eligible to apply for CSP?  I am at NIST. A: The JGI User Programs are designed to …
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An Automated Tool for Assessing Virus Data Quality
… virus sequences are being recovered and identified from environmental samples (metagenomes). However, the quality and … key roles in cycling nutrients such as carbon, nitrogen and sulfur are themselves regulated by viruses in their environments. Environmental DNA sequencing can help scientist …
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Defining a Pan-Genome for Antarctic Archaea
… The Science Haloarchaea flourish in hypersaline environments, and researchers are interested in learning how … to understanding genomic variation in Antarctic lake environments, and also to characterize regional and global … has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his team compared two strains of …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … its primary funders at the DOE Office of Biological and Environmental Research (BER), among others. New areas of …
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Mapping Heat Resistance in Yeasts
… U.S. Department of Energy (DOE) missions in energy and environment. Summary There are more than 1,000 species of … annotation to harness the genomic data. Reported October 8, 2018, in Nature Genetics , a team led by researchers at the …
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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
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JGI User Executive Committee Expands
… on interactions underlying plant adaptation in different environments. He’s been involved in several plant genome … he’s interested in finding ways to boost visibility of the CSP to encourage more plant proposals and provide feedback … in fungal genetics and evolution, he helps manage the Bacterial-Fungal Interactions Science Focus Area. He has …
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JGI Announces 2025 New Investigator Portfolio
… harness JGI capabilities such as metatranscriptomics and environmental DNA sequencing to explore microbial and plant …
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Trent Northen
… research programs using mass spectrometry for energy and environmental research, including through the Joint BioEnergy … is focused on using metabolomics to link genomes with environments to understand how webs of microbes cycle carbon … transcriptomic survey of Populus across genotypes and environments. 2024 Nature Sci Data. 11, 339. …
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JGI@25: Studying Sorghum’s Survival Skills
… to enable great science that will help solve energy and environmental challenges. Sorghum stands out as a candidate … sorghum plants in drought conditions for three years (2016-2018) in the field in Parlier, California at the UC Kearney …
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iPHoP: A Matchmaker for Phages and their Hosts
… For bacteriophage viruses, these hosts are microbes like bacteria, not humans. With metagenomic sequencing, … govern ecosystems. These organisms carry out important environmental processes like  carbon fixation , nitrogen cycling and methane production. Meanwhile, environmental viruses are constantly infecting and …
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