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Computationally Classifying Fungal Lifestyles
… genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data … tree tracking the evolution of  Dothideomycetes fungi. The  work appeared in the June issue of  Studies in Mycology . … was over 95% successful at classifying the fungal genomes Support Vector Machine (SVM)-based prediction of lifestyle …
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JGI@25: Strengthening Soybean
… by electricity anytime soon,” Stacey said when we caught up with him recently. “So, there’s going to be a need for … to date with current technology.  In addition to supporting work on the soybean plant in order to maximize yields for … to sequence — roughly 1.25 billion Gb (gigabasepairs — most fungi are around 50 million Mb, or megabases, in size). So, …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… our focus on all the kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of analysis would provide a … that we studied are involved in transfer of the amine group, or the N group, to a variety of different molecules. So …
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Guttation capsules containing hydrogen peroxide: an evolutionarily conserved NADPH oxidase gains a role in wars between related fungi
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Quantitative iTRAQ-based secretome analysis reveals species-specific and temporal shifts in carbon utilization strategies among manganese(II)-oxidizing Ascomycete fungi
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Multilevel analysis between Physcomitrium patens and Mortierellaceae endophytes explores potential long‐standing interaction among land plants and fungi
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake … and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. Within those … mushrooms are white rot fungi, belonging to an elite group of decomposers that can break down all of wood’s …
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A Genomic Perspective Across Earth’s Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy
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The Soil Blooms Green
… fields: a microbial community that might be quietly improving the soil. Penn State researchers Mary Ann Bruns and Terry Bell are digging in to understand how. …
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JGI@25: Using Team Science to Build Communities Around Data
… 1000 fungal genomes to create two reference genomes for all fungi families — essentially, the foundation for an … focused on in-depth exploration of ecology-related groups of fungi. The 1KFG project has brought together over 400 … users. Roughly 300 have been published. Spatafora said the work has “significantly advanced our understanding of 1 …
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Offerings & Capabilities
… of the JGI’s Genomic Technologies department is   ensuring users have access to cutting-edge capabilities to help advance their science by generating data in three overarching categories: Sequencing, …
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Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolus
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