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… called galls.  In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these weird little pods. …

…   This highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes … wealth of public microbiome sequence data and enables the user to analyze these data with existing bioinformatic …

… time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership more clearly. … comprised of two (or more) participants. One is a fungus (usually belonging to the ascomycetes, one of the two … work was supported by an intramural seed grant (IGSP 2008001) to DA, FL, and FD from the Duke Institute of Genomic …

… of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in … used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. … records of 8,350 organisms along with 4,355 genomes and 13.6 million genes. The results reveal that fermentative …

… identify mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are genetic … biogeochemical cycles around them. By understanding more about the genomics of MGEs and their evolution at the … the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 million viral genomes. It was also key to developing the …

Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by … degrade the plant biomass. In order to learn more about these regulatory networks in the model fungus  N. … tree of life, enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was …

CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … and removal of contamination from the host organism. As reported in Nature Biotechnology , a team from the U.S. … Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of proviruses flanked …

Secondary Metabolites group. His research interests lie in use and development of bioinformatics tools for elucidation … "Natural Prodcast" podcast, a "fireside chat"-style podcast about natural products and the science and scientists of … Hopkins University (2000) BS in Chemistry, SUNY Albany (1996) … List available on Google Scholar … Education … …

… off early from aerobic fungi, which can breathe oxygen — just like we do. Oxygen is a rich source of energy, and … Neocallimastix californiae , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department …