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SPRUCE-ing Up Science
… of biology and computer science, to reveal clues about how microbial and bacteria communities influence the … on his PhD program at UC Merced in 2013, this field was just beginning to develop and expand into the world of … resilience to warming . New Phytol. 2022 Jun;234(6):2111-2125. doi: 10.1111/nph.18072.   Byline: Ashleigh Papp …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … genes from isolates, there isn’t much scientists can tell about its function or its origin. As a result, these genes … we’ve already defined.  “A huge percentage — around 30–50% of the protein families that we knew so far — still does …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative … Institute (JGI)—have selected 11 proposals for support from 53 received through a joint research call. Submitted … the Sierra Nevada mountain range since 2014 to learn more about the microbial responses and feedbacks to warming …
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JGIota: Looking Back at Methane-Making Microbes
… those microbial methane-makers. Eventually, that could help us dial back their emissions, while still producing things … collaborators Sinead Leahy (New Zealand Agricultural Greenhouse Gas Research Centre) and Bill Kelly (AgResearch). …
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Annual Genomics of Energy & Environment Meeting
Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… well as the evolution of seed plants, the fern’s distant cousin. Ceratopteris richardii, or C-fern, specifically has … undeniable power of plants, and the lessons they can teach us, are why the U.S. Department of Energy (DOE) Joint Genome … high-quality genome assemblies and annotations for 35 species representing all major evolutionary lineages in …
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Len Pennacchio
Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to … Fellow where he identified a novel apolipoprotein (ApoA5) involved in human and mouse triglyceride metabolism. He … in Genome Biology & Technology (AGBT)” … Education … About the Deputy of Genomic Technologies … Selected …
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Green Algae Reveal One mRNA Encodes Many Proteins
Academy of Sciences , a team of researchers has found numerous examples of polycistronic expression – in which two or … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab and the Environmental … Sciences Laboratory (EMSL), a DOE Office of Science user facility. The work was partly enabled by the …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… in mammals: a structure that helps correct deleterious mutations. The Impact Shrub willow and its close relative  Populus trichocarpa,  or the poplar tree, are potential biofuel … by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to LBS, and DEB-1542599 to …
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Better Genome Editing for Bioenergy
… of the genes in a lipid-prolific yeast. The Impact The team used this set of guide RNAs on  Yarrowia lipolytica to … furthers the U.S. Department of Energy’s goal of producing sustainable fuels from alternative sources. Moreover, the … essential to  Y. lipolytica . They identified 1,377, or 17.5 percent, of  Y. lipolytica ’s genes to be required for …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
… are solicited annually for the summer term (May through August) and selected projects will receive stipend and travel …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … version of the genome is assembled into sequences of 5.5 million basepair (bp) in length, while the previous …
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