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Hiroshi Otani
… of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and … in understanding how, when and why microbes decide to produce which metabolites. … BS, Engineering, Tokyo Institute of … trove of microbial natural products. Nat Rev Microbiol. 2021 Nov;19(11):683. Mouncey NJ, Otani H, Udwary D, …
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Help from Citrus’ Bitter, Hardier Cousin
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … UF/IFAS professor of citrus breeding genetics and longtime JGI collaborator, are senior authors of the  recent study … yet sweet are its genetic secrets. This work builds upon JGI-supported research led by Gmitter and JGI’s Daniel …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the … aquatic to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide … Olpidium are obligate endoparasites of some common crops, such as lettuce and tobacco. Olpidium itself doesn’t cause …
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Virus-Microbe Interactions of Mud Island Mangroves
… will defend his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science Graduate Student … or national user facilities. Baker had worked with the JGI through a Community Science Program (CSP) proposal, and …
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At the Forefront of Terrestrial Virus Research
… co-advised by Drs. Virginia Rich and Matthew Sullivan. He shared a few thoughts on his summer at JGI through a program that provides graduate thesis research …
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A Plant Root Atlas for Tracking Developmental Trajectories
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … on single-cell and spatial transcriptomics technologies. JGI Science Programs Deputy Axel Visel provided a broader … perspective:  “ This exciting work is well aligned with the JGI’s growing efforts in establishing plant and fungal …
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Computationally Classifying Fungal Lifestyles
… major food crops and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … in Mycology . This work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… up the toxic chemicals is commonly known as Enhanced Reductive Dechlorination (ERD.) It is dependent on the presence … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … involved in successfully biodegrading PCE.  Through the JGI’s  Community Science Program , they were able to analyze …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D … reservoir of natural products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … information is encoded in DNA, with RNA delivering the instructions inside DNA to the cell, RNA viruses store their … are even less known than DNA viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as …
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Doubling Down on Known Protein Families
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … families known up until now, and identified many novel structure predictions,” said lead author on the paper Georgios … by environment and found only 7% of protein families were shared across all eight environmental categories. Instead, …
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