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Fishing for Novel Cellulose Degraders
… of equipment for fly fishing is a boxful of lures. Designed with feathers or wires to mimic an insect or a particular … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and mass spectrometry-based enzyme activity assay. The work was  reported in  The ISME Journal . While the screen …
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Siderophores and secondary metabolites produced by Ganoderma adspersum
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… now available to the global research community able to not just analyze but also create DNA sequences mimicking an array … language of biology — and primed for integration with artificial intelligence tools.  LLMs aren’t just for … and structure, and words set up in a certain way. Genomes work in a similar manner. From the gene, we have those …
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IMG/VR
… He also demonstrates briefly how to leverage novel capabilities of IMG/VR to browse and search through the more …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter scenes that came with crayons in various shades of white. To researchers … for sequences of RNA viruses in large data sets, their work may be akin to finding a single snowflake on a …
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JGI@25: Studying Sorghum’s Survival Skills
… biofuels thanks to its drought and flood hardiness. Even with little water, full sunlight and hot temperatures, … sorghum’s survival secrets could change not only how we use and grow sorghum, but other important crops as well. In … line is sweeter, taller, and grows more biomass. In ongoing work, JGI and collaborators are continuing to generate …
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Four Researchers Join JGI User Executive Committee
… Four researchers have been elected to the User Executive Committee of the Joint Genome Institute, a … an associate professor at the University of Georgia whose work is at the interface between biology and computer … He studies fungal biodiversity, ecology, and evolution, with a focus on microbiome sciences and fungal symbioses. He …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… human population and increasing demand for agricultural products.  Sorghum bicolor (L.) Moench is an African grass … (UC), Berkeley, UC Agriculture and Natural Resources (ANR), US Department of Agriculture P­­lant Gene Expression Center, … the mechanisms through which sorghum is equipped to deal with adverse environmental conditions, researchers hope to …
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Forming Scientific Connections and Building Community
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven … In just two months, the students participated in networking workshops, data carpentry hackathons, and also made … had to say about their experiences and what they’ll take with them as they go forward in their careers.   Listed …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose … carbon and cycle key nutrients like nitrogen and phosphorus.  This way, the fungi of forest soils hold keys to tree … these are complicated interactions to untangle. Fungi work in cooperation to support a forest, and species vary …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… was green millet (Setaria viridis), a small model grass with a short lifecycle that uses a carbon fixation process known as the C4 pathway, … a good reason nobody’s done it; it’s a heck of a lot of work. I wouldn’t have done it without the contribution of … in the physical sciences in the United States, and is working to address some of the most pressing challenges of …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… Zhong Wang and Science Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant … explained: “One of the hallmarks of JGI is our diverse workforce and our diverse collaborators around the world. … tap into the diverse talent that UC Merced has is tremendous for us, and we are very grateful for this opportunity.” …
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