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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of … habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information … Dr. Rochon from Agri-Food Canada at Summerland BC aimed to generate whole genome data of Olpidium. This required an …
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iPHoP: A Matchmaker for Phages and their Hosts
… be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like … more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic sequences … the model, the team used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… to spread across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. polymorpha has been used as a … 35 major evolutionary plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. … . The comparative framework provided by these high quality reference genome sequences could help researchers better …
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What Happens Underground Influences Global Nutrient Cycles
… projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy … alga  Chlamydomonas reinhardtii , one of the JGI’s Flagship genomes. She and her colleagues have generated a high-quality, phenotyped mutant library in …
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IMA genome-F18
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A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
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Evolution of a Fungal Gene Expression Regulator
… 5mC is an important piece of how they regulate their genomes, but is not well understood in fungi. A team of … ways to protect poplar and other crops being considered for bioenergy feedstock development. Summary With the aim of producing at least one reference genome for every family of fungi, the 1000 Fungal …
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Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome
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Forming Scientific Connections and Building Community
… experiences and what they’ll take with them as they go forward in their careers.   Listed below are the interns, … JGI brings and being able to be a part of groundbreaking research is very sentimental to me.” Mentors: Crysten … Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein Bendall : “It’s great meeting …
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Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage
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A Novel Freshwater to Marine Evolutionary Transition Revealed within Methylophilaceae Bacteria from the Arctic Ocean
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Community Structure and Microbial Associations in Sediment-Free Methanotrophic Enrichment Cultures from a Marine Methane Seep
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