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SIPs with Standards
… show which microbes are handling specific nutrients, or what they're doing with those nutrients, and even how quickly. But there's a catch: SIP labwork and analysis can be very demanding.  The … is to generate SIP data that can be useful to multiple teams and analyses. This episode, Rex Malmstrom (JGI), and …
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Building on Experience, With a Twist?
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. … to go beyond understanding which microbes are present in a sample, to generate data about which organisms are active, …
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Katherine Louie
… to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for … reservoir of natural products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards … in maize (Zea mays). Scientific Reports. 2021. doi:10.1038/s41598-020-79320-z 3. Louie KB, Kosina SM, Hu Y, Otani …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Back in 2011, JGI-supported researchers published a paper in the … metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State University campuses for biotechnology education as part of a …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) … thrive in warm, arid environments. Corn and sugarcane are among the major high-yield C4 crops, as are the candidate …
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Annual Genomics of Energy & Environment Meeting
Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics … Energy & Environment Meeting! The JGI convenes this annual gathering of leaders from diverse disciplines to highlight … infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – that the JGI …
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Crops as Tough as World Cup Turf
… other crops to grow well in worse conditions: with more heat, less water and less fertilizer. Grasses do better in these conditions, so plant biologists James Schable, Guangchao Sun and Vladimir Torrres have looked … to be the same species that covered World Cup pitches in 2022.                     …
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Integrating Experimentation with Data
… (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) for “Empowering Automated Laboratories: Integrating Experimentation with Data.” … user meeting will feature insightful presentations, dynamic panel discussions, informative poster sessions, …
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Progress Reports: 2002–2020
Report … FY13 Progress Report … FY12 Progress Report … FY11 Progress Report … FY10 Progress Report … FY09 Progress …
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Toward More Efficient Artificial Photosynthesis
Chloroplast mimic a platform to capture and utilize carbon in a synthetic fixation … a foundational asset that allows them to innovate by screening for well-performing CO2-fixing enzymes and other … Initiative of Excellence (IDEX Bordeaux; (ANR)-10-IDEX-03-02). T.E.M. and R.M. were supported by the International …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and … researchers Mike Wilkins and his graduate student Kaela Amundson at Colorado State University have many questions … National Laboratory. Letters of Intent are due March 16, 2022 to freely access resources at multiple DOE user …
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