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Evolution of a Fungal Gene Expression Regulator
… analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a … can lead to changes in protein structures and functions, but the DNA bases themselves can also be modified. The … abundance of fungal genomes underscores the need for a more comprehensive exploration of genomic DNA modifications …
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the … Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of these researchers were involved in, … than 200 scientists and sequenced by the JGI through the  Community Science Program, and already available on the …
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A Plant Root Atlas for Tracking Developmental Trajectories
… zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and combining the information with previously published … Phytozome and will be available for future single-cell projects.” The Berkeley Lab  Biosciences Area has been …
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JGI on the 2021 Highly Cited Researchers List
… Congratulations to the 2021 Highly Cited Researchers at the … Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of these researchers were involved in, … part of a long-term multi-institutional research team that combined field data with a reference switchgrass genome to …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have … and model species. The following year saw the beginnings of common switchgrass gardens to track crop productivity across … have also harnessed the switchgrass gardens for other projects. At the 2021 JGI Annual Meeting, David Lowry talked …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… hitchhikers. These organisms are abundant and yet exceptionally small, with mini genomes to match. As a result, they … to survive. To fill in their nutrient gaps, they must latch onto a larger host — often, a fellow archaeal microbe. … acquire carbon efficiently and convert it to usable organic compounds. However, no microbe works alone. Archaea, …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … advantage these fungi wield: the capacity to form enzyme complexes that work like assembly lines for efficiency.  In … into biochemical production.    Over time, as these projects have delivered results, they have also snowballed …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of the Earth’s carbon as well as material that can be converted to energy, are … gas emissions. Understanding how sphagnum, a primary component of peatlands, processes  carbon can help maximize …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( … protect maize by fending off fungal and microbial infections. Scientists had assumed that maize synthesizes these … AFRI (1758976 to A.H. and E.S.) for sesquiterpenoids, National Science Foundation Plant-Biotic Interactions Program …
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What Happens Underground Influences Global Nutrient Cycles
… EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of … proposal in the inter-organismal interactions focus area comes from Malak Tfaily of the University of Arizona. Her …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the metabolomic analysis capability available through the  Community Science Program (CSP) . This includes mass … New Investigator and  Functional Genomics proposal calls, projects can request up to 50 polar and 150 nonpolar …
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DAP-seq Drives Robust Mapping of Gene Regulation
… assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex wiring behind a city’s power grid. Just as the flow … robustness will enable researchers to propose multi-genome projects, opening new avenues for comparative regulatory …
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