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Nikos Kyrpides
S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … Nature . 578:432-436 Roux S. et al. 2019. Cryptic inoviruses are pervasive in bacteria and archaea across Earth’s …
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Frequently Asked Questions: Proposal Submission
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Waiting to Respire
… and research scientist Frederik Schulz in Woyke’s Single Cells group had generated and analyzed single amplified …
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Supercharging SIP in the Fungal Hyphosphere
… of land plants, which means they offer a lot of insights into how plant materials can be broken down for things like … a stable isotope to it. The isotopes are incorporated into the DNA of specific microbes who consume the labeled … water, the microbial DNA is manually separated into a few different groups based on its density — DNA containing …
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The More the Merrier: Making the Case for Plant Pan-genomes
… correspond to the same recurrent speciation outcome or to different species,” added Catalan. Overall, Vogel noted, the … been expected. “Although every case is probably going to be different, at least for B. hybridum it’s happening a lot …
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A One-Stop Shop for Analyzing Algal Genomes
… that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, compare them, and … bringing together publicly available genomic data on algae into one place, PhycoCosm allows users to easily compile … the evolutionary and functional relationships among the different algae. Scientists can use PhycoCosm’s genome …
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Fungal Friends or Foes in Plant Roots
… roots are akin to the ground floor lobby. People walking into the lobby have many reasons for being there, but … L.A. … Arabidopsis thaliana on MycoCosm data portal … Differentiating friends from foes in the fungal root …
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Building Sphagnum Genomic Resources
… reference genomes for peat-forming species that occupy different microhabitats – Sphagnum fallax and S. … work reflects a collaboration between two programs within different Divisions of the Office of Biological and …
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JGI@25: The Little Alga That Could
Retaining ancestral features of both plant and animal cells, it shares nearly 7,000 genes with other organisms (a …
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JGI@25: From Life at the Extremes to Editing Genomes
… of intrigue down my spine; if CRISPR was present in so many different species, there was a good chance that nature was …
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Tracing the Evolution of Shiitake Mushrooms
… could provide strategies for converting plant waste into sugars for  biofuel production. Additionally, these … access carbon previously locked away in wood, converting it into their own carbon-rich structures, as well as … that brought together 39 researchers from eight different countries. Genome and transcriptome sequencing …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… and evaluates multiple predictions to reliably match viruses with their archaea and bacteria hosts.  Jeremy …
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