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Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi.
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Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants
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Rhizosphere and detritusphere habitats modulate expression of soil N-cycling genes during plant development
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Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi
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EnZymClass: Substrate specificity prediction tool of plant acyl-ACP thioesterases based on ensemble learning
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iPHoP: A Matchmaker for Phages and their Hosts
… microbial communities. One day, these phages could boost plant-microbe interactions, nutrient cycling, or carbon sequestration. Summary Existing programs use a variety of approaches to match a virus with a … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working … virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate … Impact on Microbial Root … Cross Species Comparison of Plant Single-cell Transcriptomes of Rice and Arabidopsis …
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Busting the Unbreakable Lignin
… evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, and … for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the reference fungal  genome …
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Micro-Scale Applications Group
Probing (SIP) Metagenomics pipeline that utilizes internal analytical standards to accurately measure … is eating what?” and “who is active? … The JGI provides users access to cutting-edge cell sorting, DNA …
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THE Bioenergy Tree
… trees in the Northern Hemisphere, making them tantalizing plants to harness for bioenergy. In this episode, hear from … poplar an economical and sustainable source of energy and materials. …
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JGI Launches Latest Strategic Plan
… to begin a month later. In parallel with the intricate move preparations, the JGI has released its newest 5-Year … our Berkeley Lab colleagues, particularly with the other user facilities including the Advanced Light Source, the Molecular Foundry, NERSC and ESnet, as well as externally to prospective partners to generate awareness of and …
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Scaling Up Existing Skill Sets
… internship opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from … anyone in the Institute to get feedback and insights on the project and everyone’s willingness to guide or mentor me … researchers and help expand or develop more internship programs like the JGI Internship Program during my STEM …
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