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Polar Phytoplankton Need Zinc to Cope with the Cold
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Laboratory (Berkeley Lab) through the JGI Community Science Program (CSP) .  Through this collaboration, in 2017, they … is part of a long-term collaboration with the JGI Algal Program, which explores genomics of algal diversity and …
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Matthew Kellom
… interest. Matt also supports various CSP and FICUS user projects for the Metagenome Program. …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Genome Initiative in 2018 as part of its Community Science Program. The OGG has set out to generate high-quality genome … life. Ultimately, the resulting comparative framework can inform the efficient production of plant-based biofuels and …
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An Automated Tool for Assessing Virus Data Quality
… are being recovered and identified from environmental samples (metagenomes). However, the quality and completeness … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and guidelines for providing the minimum amount of information for an uncultivated virus genome. CheckV has …
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Mining Metagenomes for Cas Proteins
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. The sequences were then … the event of a new infection, the microbes use the genetic information encoded in CRISPR sequences to target the virus … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the …
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An Earth Month Look at Sustainability Efforts at the JGI
… gas impacts from all of our operations,” said Brie Fulton, program manager for  Sustainable Berkeley Lab (SBL). By … the JGI committed to using Stirling freezers to store samples, which use less than half as much energy as other … began its most ambitious project yet: a special recycling program to recycle lab plastics, which account for much of …
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Training the Next Generation of Talent
… New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after … Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the … project had him developing a framework that would allow users to simultaneously run several programs for RNA-Seq …
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Virus-Microbe Interactions of Mud Island Mangroves
… the DOE Office of Science Graduate Student Research (SCGSR) program , which awards graduate students the opportunity to … at one of the DOE national laboratories or national user facilities. Baker had worked with the JGI through a … carbon cycling in coastal mangroves. His work centers on samples collected on Mud Island – “it’s essentially a mud …
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JGI-KBase Panel at SACNAS
… through the Department of Energy-funded National Labs, User Facilities and Programs, and introduce best practices for anyone to get … their contributions to science. A panel of DOE researchers, program managers, and intern alumni will introduce projects …
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Doubling Down on Known Protein Families
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of these communities via whole genome sequencing of the samples, without being able to distinguish which gene … genes were typically discarded from any analysis as useless information. These represent the ‘unknown unknowns’ because …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… the DOE Joint Genome Institute (JGI)-UC Merced internship program and current PhD student, reached this milestone with … Wint and her mentors discovered in the genomes helped to reinforce Charles Darwin’s “survival of the fittest” theory — … fungal genomes covering the entire kingdom of fungi. “The information from this project may also have a practical …
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Work With the JGI! Tips for a Winning CSP Proposal
… The JGI’s Community Science Program gives researchers access to all kinds of sequencing, ‘omics and bioinformatics capabilities — and it’s open to scientists at … this episode, hear proposal tips from Tanja Woyke, who runs user programs at the JGI, and project manager Miranda …
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