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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus … is a superorganism: one being that is actually comprised of two (or more) participants. One is a fungus (usually …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … ago with a proposal from UT-Austin’s Tom Juenger, a longtime JGI collaborator and a senior author on this study. The … in the gardens. “Tom gave me a truck and I drove all over Texas with a shovel,” recalled study co-author David …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now … University campuses for biotechnology education as part of a course-based undergraduate resource experience. Hear from CSU San Marcos Professor Matt Escobar and UC Davis Associate Professor …
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DOE JGI Interns Share Their Summer Experiences
… the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching genomic data at a computer; a few had the opportunity to spend time out in the field, work at the lab bench, and also do …
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Katherine Louie
… efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … techniques, the platform delivers rich metabolite profiles from diverse biological and environmental samples in … untargeted analysis pipelines.  Beyond profiling over 10k samples/year, Dr. Louie and her team work with …
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Polar Phytoplankton Need Zinc to Cope with the Cold
Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters of Antarctica, tiny ocean-dwellers called phytoplankton play … microalga: the diatom Fragilariopsis cylindrus . At that time, they noted that the F. cylindrus genome encoded more …
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NeLLi — Symposium on New Lineages of Life
… 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of cellular complexity and …
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Genome-Resolved Meta-Omics Ties Microbial Dynamics to Process Performance in Biotechnology for Thiocyanate Degradation
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A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … Shiitake mushrooms get their name from the same place they often source their nutrients — the shii tree, a Japanese … originated in the tropics of the Asia-Australia region. Overall, pangenome analysis showed significantly more …
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Ice cover extent drives phytoplankton and bacterial community structure in a large north‐temperate lake: implications for a warming climate
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Dan Rokhsar
… directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of the human genome project, Professor Dr. Rokhsar ’s team … and refined in the sequencing and evolutionary analysis of over fifty plant and animal genomes. He currently leads the …
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