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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and … users through a BER data ecosystem.  A data ecosystem is a connected resource where data from different organizations is discoverable and accessible. Linking the resources of … specifically optimized for high-performance computing environments. …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … understanding the global carbon cycle and greenhouse gas dynamics, and the engineering of new, optimized … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The … chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the dynamics of gene expression as it grows back vigorously year … DOE Center for Advanced Bioenergy and Bioproducts Innovation, which is supported by the U.S. Department of Energy, …
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Comparative genomics and expression levels of hydrophobins from eight mycorrhizal genomes
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora … of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the … fungus  Neurospora crassa, and to identify and decide on the order in which this fungus breaks down plant cell …
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JGI User Executive Committee Expands
… Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). They are: Ivan Baxter of the … change biodiversity, and how these changes affect the dynamics and functioning of ecosystems. She leads a recently …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one “petabase” – a quadrillion … with the other user facilities including the Advanced Light Source, the Molecular Foundry, NERSC and ESnet, as …
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Making a Lichen Together
… clearly. The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … model global carbon and nitrogen cycling. Summary To shed light on lichen, an international team led by Daniele … (for DNA sequencing and assembly); by a three-year subcontract to DA, FL, and FD (for bioinformatics) from a DOE …
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Hiding in Plain Sight: The Globally Distributed Bacterial Candidate Phylum PAUC34f
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Eight genome sequences of bacterial, environmental isolates from Canada Glacier, Antarctica
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Eight genome sequences of bacterial environmental isolates from Marr Pond, Antarctica
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