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An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments
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Time-series metagenomics reveals changing protistan ecology of a temperate dimictic lake
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Persistent memory as an effective alternative to random access memory in metagenome assembly
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NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes
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IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
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Individual genome assembly from complex community short-read metagenomic datasets
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes … exactly how the microbial community carries out its helpful metabolism: who’s responsible for what biochemical …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
With a new methodology, scientists are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the … , scientists usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. For …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the … were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  …
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Genomes of Three Methylotrophs from a Single Niche Reveal the Genetic and Metabolic Divergence of the Methylophilaceae
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Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses
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