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Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth
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A k-mer-based approach for phylogenetic classification of taxa in environmental genomic data.
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Supercharging SIP in the Fungal Hyphosphere
… The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, with results published in the  … at a larger scale through downstream DNA purification and sequencing steps. Ultimately, researchers found their …
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The trajectory of microbial single-cell sequencing
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … comparative transcriptomics. *The HudsonAlpha Genome Sequencing Center works with scientists at the JGI a lot. In …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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Dispatches From JGI Interns
… with JGI mentors. In this episode, hear two interns from the 2021 cohort describe their deep dives into genomics, computational tools, and big data.  …
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Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi
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Extensions of BLUP Models for Genomic Prediction in Heterogeneous Populations: Application in a Diverse Switchgrass Sample
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from around the world. By complete sequencing of 24 new mushroom genomes, and assembling …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Metagenomes from two microbial consortia associated with Santa Barbara seep oil
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