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Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger
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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… from this biomanufacturing collaboration is available for licensing. The Science In  Nature Communications , … U.S. Department of Energy national user facilities – the DOE Joint Genome Institute and the Molecular Foundry – both … produced by living organisms. The collaboration between the JGI and the Foundry on this project highlights an  ongoing …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to … automations for DNA design, assembly and analysis Overview of biodesign products The JGI Biodesign platform enables users to validate hypotheses … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… and Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
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Rex Malmstrom
… and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … that require fluorescence activated cell sorting and non-standard molecular protocols.  Finally, his team utilizes … Ph.D. in Marine Biology/Biochemistry, University of Delaware BA in Biology, Boston University ( magna cum …
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Plant Program User Advisory Committee
… The Plant Program Advisory Committee is chartered to offer advice, guidance and counsel on the effective … and scientific relevance and quality. The Committee does not perform management functions nor does it direct the Program's …
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Scaffolded and annotated nuclear and organelle genomes of the North American brown alga Saccharina latissima
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Draft genome assembly and annotation of Haematococcus lacustris strain Liv1, an industrial astaxanthin-producing microalga
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Grimwood heads the Library Construction group for the JGI Plant Program . Her collaborations with the JGI began … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … and the JGI. Building off this work, researchers at three DOE Bioenergy Research Centers (BRCs) have expanded the …
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