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Identification of Cellulose-Responsive Bacterial and Fungal Communities in Geographically and Edaphically Different Soils by Using Stable Isotope Probing
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Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics
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Use of Agrobacterium rhizogenes Strain 18r12v and Paromomycin Selection for Transformation of Brachypodium distachyon and Brachypodium sylvaticum
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Self-Buffering system for Cost-Effective production of lactic acid from glucose and xylose using Acid-Tolerant Issatchenkia orientalis
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Dominant nitrogen metabolisms of a warm, seasonally anoxic freshwater ecosystem revealed using genome resolved metatranscriptomics
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Potential Biocontrol Activities of Populus Endophytes against Several Plant Pathogens Using Different Inhibitory Mechanisms
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Functional investigation of five R2R3-MYB transcription factors associated with wood development in Eucalyptus using DAP-seq-ML
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, … of specific 5mC methyltransferase (MTase) variants. Using new sequencing technologies for producing both … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of …
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How to Target a Microbial Needle within a Community Haystack
… the Max Planck Institute (MPI) for Marine Microbiology has developed, tested and deployed a pipeline to first target … sample and then sorting these cells so that their DNA could be sequenced. Their protocol,  detailed in the … , combines multiple techniques and was demonstrated using a specific group of marine bacteria called “Vis6” that …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our … Kaze is a University of California (UC), Merced graduate student working with  Susannah Tringe , JGI’s User Programs … Kaze took on the challenge of explaining her research using the ten hundred most commonly used words in the …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  … the tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a … on their ratios of small DNA sequence fragments called tetranucleotides, are a way to measure the collection of the …
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately identify mobile genetic elements like plasmids and viruses. … and metatranscriptomes. To lower barriers to accessing and using geNomad, the JGI partnered with the NMDC to integrate … The U.S. Department of Energy Joint Genome Institute …
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