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Integrative analysis of multimodal mass spectrometry data in MZmine 3
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
With a new methodology, scientists are now getting more complete … the microbiome of the earth, but most species do not grow easily in the lab. To access the genomes of uncultured  … cells and then amplifying their DNA for genome sequencing was no easy task. The traditional way of collecting them is …
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab … 100 were silent. Twenty years after the JGI united the genomics expertise of three national labs in one long … platforms were turned back on. A third sequencing platform was scheduled to resume production runs before the end of the …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … in carbon fixation in the dark ocean. Combining single cell genomics and synthetic biology, a team studying microbial …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows … they are, and the roles that they might play in the wild, hasn’t been clear. Now, to answer these questions, a team led … who led the research team and is the head of the Viral Genomics group at the JGI, thinks that if you’re a virus or …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some … interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  …
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, researchers have … in changing conditions. The products of photosynthesis are easy to point out. Plants, algae and cyanobacteria create the … of this domain, often bound to other protein structures. Repeatedly, this search surfaced another important partner for …
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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a … Response, Compensation, and Liability Act (CERCLA) was enacted by Congress in 1980 for Superfund sites which are … support was provided by the National Center for Research Resources (NCRR) (5P20RR016480-12) and the National …
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SAR11 bacteria linked to ocean anoxia and nitrogen loss
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Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales
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Untargeted, tandem mass spectrometry metaproteome of Columbia River sediments.
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SIMILE enables alignment of tandem mass spectra with statistical significance
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