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Optimized CRISPR Interference System for Investigating Pseudomonas alloputida Genes Involved in Rhizosphere Microbiome Assembly
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Spacer2PAM: A computational framework to guide experimental determination of functional CRISPR-Cas system PAM sequences
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A Grass Model to Help Improve Giant Miscanthus
… insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for … team. The work was a joint effort led by scientists at the Center for Advanced Bioenergy and … to novel traits. M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these sets …
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You Can Move, But You Can’t Hide
… mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are genetic entities … National Laboratory (Berkeley Lab), with computing resources provided by NERSC, another user facility at Berkeley … genomics of MGEs and their evolution at the cellular level, scientists can better understand ecosystem-wide processes. …
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Fishing for Novel Cellulose Degraders
… hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … enzyme activity assay. The work was  reported in  The ISME Journal . While the screen caught several microbes from known …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers … about their ability to adapt to changing environments, scientists have turned their attention to the pangenomes of … of the  Marchantia pangenome, scientists developed a resource that associates plant’s genetic variants with specific …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… (SFA²F) meeting brings together established and emerging scientists from academia, industry, and government … talk and a tech talk. Stop by the JGI booth to learn about our user programs and how we can help advance your science. …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … biological and environmental samples in support of user science.  Capabilities offered by the platform are a result … samples/year, Dr. Louie and her team work with other JGI scientists in development of new, advanced mass spectrometry …
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When “The Blob” Made It Hotter Under the Water
… event may foreshadow climate change impact on marine microbial communities. The Science A team of researchers tracked the impact of a … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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iPHoP: A Matchmaker for Phages and their Hosts
… computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do … opens the possibility of using phages to engineer microbial communities. One day, these phages could boost … described in Plos Biology , the research team led by scientists at the U.S. Department of Energy Joint Genome …
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Advances on genomics, biology, ecology and evolution of Brachypodium, a bridging model grass system for cereals and biofuel grasses
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Self-Buffering system for Cost-Effective production of lactic acid from glucose and xylose using Acid-Tolerant Issatchenkia orientalis
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