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Calculating the Costs of Multiple Switchgrass Gene Copies
… a feedstock for biomass-based biofuel production. As seen with many commonly cultivated commercial crops such as … for selection to improve biofuel yield through a changing future. Switchgrass has multiple naturally occurring ploidy … when switchgrass (and by extension similar taxa) are faced with pronounced environmental fluctuations. New findings …
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A Community Resource for Secondary Metabolite Researchers
… an interactive public database for the research community. With more than 13 million BGCs in the catalog at the time of … metabolites portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as IMG-ABC. … and viral BGC sequences. Expansion of the SMC to include fungal, plant, viral, and metagenome data is currently …
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Axel Visel
… for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic … provides direction, leadership, and oversight for all JGI scientific programs. The Deputy of Science is also … of scientific policy, engaging in interactions with the scientific community at large. …
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JGI Announces 2026 Functional Genomics Recipients
… resources. Enabled by the capabilities and expertise within the JGI, these projects integrate genomic data with cutting edge experimental techniques for predictive … bioeconomy. The JGI is a DOE Office of Science national scientific user facility supported by the Biological and …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… and University of California (UC), Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has … term efforts to contribute towards a diverse workforce and scientific community (working with the JGI) as well as our …
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SPRUCE-ing Up Science
… Oak Ridge, Tennessee. Recently, Lawrence, in collaboration with researchers from ORNL, Lawrence Berkeley National … in machine learning. Despite working alongside his scientific idols, Lawrence recalls feeling very comfortable. … said. Wang, a vocal advocate on the importance of giving scientific presentations, maintains this expectation of his …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern … gene transfers from bacteria have all armed the plant with an array of defense mechanisms. The Impact There are … Open Green Genomes initiative on Phytozome …
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A Collaboration to Improve Plant Genome Annotations Across Species
… the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which … Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the … and evolutionarily conserved genes that could be potential future targets for functional genomic studies. We also …
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Building Sphagnum Genomic Resources
… researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different … These resources would provide the research community with the ability to address questions such as sphagnum’s associations with methane oxidizing bacteria, nutrient uptake, and its …
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their derivatives during her … School of Natural Sciences since 2015. Prospective users with specific questions regarding their proposed research are encouraged to schedule time with Tanja Woyke . Click to schedule  …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint appointment with … developed a method to correctly identify polyploid subgenomes without needing to know the genomes of their … fact that he can use what they’ve developed here to further future research and answer complex questions. …
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JGI Early Career Researchers Featured in mSystems Special Issue
… stable isotope probing (DNA SIP) relies on incubating DNA with isotopically-labeled compounds to link active microbes … processes. A third approach steps away from reconstructing genomes directly from the environment and focuses on … achieved thus far based on computational predictions, and future directions integrating computational and experimental …
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