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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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A synthesis of bacterial and archaeal phenotypic trait data
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Frederik Schulz
Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the … sequence data. Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and …
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David Goodstein
With a background in experimental and computational surface physics, Dr. … Genome Project, he began developing larger comparative genomic systems as the JGI’s eukaryote research efforts … the Phytozome Plant Genomics web portal. … BS in Physics, New York University, NY M.S in Physics, Cornell University, …
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Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass  Miscanthus sinensis … of rapidly growing plants whose biomass can be renewably converted into energy or biofuels. Although a member …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
Researchers looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match … characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … Korea as well as a faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … Generating these datasets opens up the possibility of new insights across ecosystems and research teams. Even … User Engagement Lead for the DOE Systems Biology Knowledgebase (KBase), as well as researchers from Pacific …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in … in the genome by adding tagged transcription factors to a genomic DNA library. “It’s an innovative way to rapidly … factors have been repurposed during evolution to control new functions,” O’Malley said. “Combining the two approaches …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. … research activity is focused on developing and implementing new technologies and methodologies that facilitate discovery … Otani H, Udwary DW, Mouncey NJ. Comparative and pangenomic analysis of the genus Streptomyces. Sci Rep. 2022 …
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Sphingomonas palmae sp. nov. and Sphingomonas gellani sp. nov., endophytically associated phyllosphere bacteria isolated from economically important crop plants
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a tree falls in the forest — whether or not anyone registers the sound — … fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved …
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