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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … friends or foes. The Impact Microbial communities comprised of fungi and bacteria can thrive in plant roots. They play … microbes not to impede host health. For JGI Fungal Program head Igor Grigoriev , the paper is an “excellent example” of …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and … a foundational data set that is now available through a new  single-cell data viewer that was collaboratively … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Assemblathon 1: A competitive assessment of de novo short read assembly methods
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Accurate, multi-kb reads resolve complex populations and detect rare microorganisms
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Genomic adaptations of the halophilic Dead Sea filamentous fungus Eurotium rubrum
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De novo Nanopore read quality improvement using deep learning
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Hybrid error correction and de novo assembly of single-molecule sequencing reads
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Counting dots or counting reads? Complementary approaches to estimate virus-to-microbe ratios
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Depth-resolved paired metagenomes and metatranscriptomes from the Lake Erie ‘dead zone’
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … How can I get that NEON Biorepository Letter of Support ahead of filing a proposal? A:  If you have a good idea of … staying up to date via our website, social media, and newsletter. Q:  How would people find out about the NEON …
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A Powerful Technique to Study Microbes, Now Easier
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant … to predict the biological meaning and relevance of new sequences. It can generate novel sequences based on the …
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