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The Case for Conservation
… “older than dinosaurs” could help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how …
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A Model System for Perennial Grasses
… hallii genomes offer insights to drought tolerance. The Science Researchers have developed a genomic model to study … ( Panicum virgatum ) is a candidate bioenergy feedstock with a complex genome with multiple copies of its … including researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, report the …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a … this “ data tsunami ,” as Kathy Yelick of the Computing Sciences Area at Lawrence Berkeley National Laboratory … such tools has been a collaborative effort. For example, with support from the  Exascale Computing Project , the JGI …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 years ago, the  Genomes OnLine … the appropriate contextual information, or metadata, stored with them. GOLD provides manually curated metadata resources …
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CSP Functional Genomics
… function.  The emphasis is on projects leveraging JGI’s Biodesign and ‘omics capabilities to enhance … genome function, particularly those not readily achievable without the capabilities and expertise available at the JGI. Proposals to this call may be submitted to the JGI at …
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Refining the Process of Identifying Algae Biotechnology Candidates
… [subhed -- copy to summary above^ as well ] The Science The recipe for growing algae as a source of … seems fairly simple: place these algae in a container with access to sunlight, water and carbon dioxide so they … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Evolution of a Fungal Gene Expression Regulator
… date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome sequence can … considered for bioenergy feedstock development. Summary With the aim of producing at least one reference genome for … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like …
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A Community Resource for Secondary Metabolite Researchers
… Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary … an interactive public database for the research community. With more than 13 million BGCs in the catalog at the time of … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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First Monoploid Reference Sequence of Sugarcane
… a reference for the highly complex sugarcane genome . The Science Most species are diploids and have two sets of … species, sequencing programs generally focus on a genotype with two identical sets of chromosomes to produce a … polyploid sugarcane genome now underway as part of the JGI Community Science Program (CSP), a critical factor in …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities …
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From Competition to Cooperation
… symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, … independently evolved to establish symbiotic relationships with plants (mycorrhizae), and particularly how fungi that … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven … had to say about their experiences and what they’ll take with them as they go forward in their careers.   Listed …
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