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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … of contamination from the host organism. As reported in Nature Biotechnology , a team from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Busting the Unbreakable Lignin
California at Santa Barbara  recently published a paper in  Nature Microbiology offering irrefutable evidence that … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes responsible for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… of the United States. As  reported January 27, 2021 in  Nature , the team led by researchers at the University of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … with a proposal from UT-Austin’s Tom Juenger, a longtime JGI collaborator and a senior author on this study. The use …
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How Maize Makes An Antibiotic Cocktail
… as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. … scientists had suspected. A team  recently reported in  Nature Plants that the zealexin pathway has an “hourglass” … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
On February 17, 2021, JGI and the Environmental Molecular Sciences Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User … as long as the data are not proprietary. In addition, the JGI has a Partnerships Development Team which helps catalyze …
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Trent Northen
… the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using … survey of Populus across genotypes and environments. 2024 Nature Sci Data. 11, 339. …
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Yasuo Yoshikuni
… has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also manages the Synthetic Biology … for building composite materials. Before joining the JGI, Dr. Yoshikuni was co-founder and chief science officer … ATP generation is more proteome efficient than glycolysis., Nature Chemical Biology , 2024 Dubinkina et al., A …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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Len Pennacchio
… … The Deputy of Genomic Technologies serves as the JGI’s primary point of contact for all High-Throughput Data … technologies and providing a vision for future technical JGI directions for DOE User science. … Complete Publications …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … to culture these microbes in the lab. After joining the JGI, he formed the Microscale Applications group to operate … discrete stages of the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A …
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Refining the Process of Identifying Algae Biotechnology Candidates
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The Scenedesmus genome was sequenced and assembled at the JGI. Sara Calhoun in Igor Grigoriev’s team at the JGI led the multi-omics analysis effort for a more complete …
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