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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have … great science that will help solve energy and environmental challenges.   Scanning the California oak woodlands from the … the US Department of Agriculture and the National Science Foundation. The monumental challenge of this …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … they work, and applying them to environmental and energy challenges. But not all scientists have the expertise and … of the underlying genes. These genes then provided a foundation that allowed the scientists to interrogate the …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome … to doing polishing with Illumina reads? A:  The JGI has found that it’s not necessary to polish with both, and … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Bacterial Genome Annotation
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A bacterial toolkit for plants
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have … while the filipes variety is less drought tolerant and is found in river and coastal environments. The Impact The … expression and physiological responses to drought. They found that trans-regulating factors are important regulatory …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been important in early … just a few pieces of DNA. Summary The extreme environments found in Yellowstone National Park include a wide range of … by Pacific Northwest National Laboratory, National Science Foundation Integrative Graduate Education and Research …
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The fungus that made itself at home
… Retracing how the dry rot Serpula lacrymans adapted to a new … lignin behind. The brown rot Serpula lacrymans is typically found in spruce and other conifers in boreal forests. As … that was sequenced and analyzed by the JGI. The researchers found that S. lacrymans var. lacrymans has become an …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial … Bioinformatics Program Fellow at the Gordon and Betty Moore Foundation as part of the Marine Microbiology Initiative. … to learn more about the program's areas of focus, major initiatives and more.  …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … of life’s genetic blueprint has long been a significant challenge in genomics. Enter GenomeOcean, a powerful … “Most models rely on reference genomes to train genome foundation models. However, the sheer vastness of microbial …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility … that enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is the largest …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in … communities of these microalgae interact, researchers have found that polar algae rely on dissolved zinc to … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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