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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… and molecular characterization capabilities in just one research proposal. Guest speaker Michelle O’Malley of UC … will be competitive. Q:  Can you elaborate on the single-cell genomics capabilities? A:  EMSL’s capabilities include laser capture microdissection, single cell sorting and nanoPOTs. The JGI’s single cell …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… ASM Microbe Meeting in Los Angeles, Calif.  Roux is also one of the lead organizers of the Viral EcoGenomics & … discussions on how to capture and characterize viral diversity, understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity.  In 2021, he was among those selected by the DOE …
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DAP-seq Drives Robust Mapping of Gene Regulation
… a single experiment — and integrated these data with single-cell gene expression maps. Together, the scale of data … adaptation. “You learn a lot more than you would from each one individually,” Baumgart added. “By combining these data, … is a very generalizable method,” Baumgart said. “We’ve done it in fungi, plants, bacteria and archaea. It works on …
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What Happens Underground Influences Global Nutrient Cycles
… a joint research call. Submitted proposals addressed one of the following focus topic areas: Biofuels and … Berkeley studies the alga  Chlamydomonas reinhardtii , one of the JGI’s Flagship genomes. She and her colleagues … algae and land plants.  Within the biogeochemistry group, one of the four proposals selected is led by Eoin Brodie of …
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JGI@25: Strengthening Soybean
… as well as the Sainsbury Institute, by annotating not just one but three genomes for P. pachyrhizi , which are … Fungal Datasets …
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Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments
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Enlarging Windows into Understanding Gene Functions
… Lawrence Berkeley National Laboratory (Berkeley Lab). And one of the tools that researchers can apply to study the … the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We … could be useful for industrial biofuel production, and multicellular development. “DAP-Seq is the main source of …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… kill outright, replicating so thoroughly that they lyse the cell — a process called lytic infection. But some viruses … host indefinitely. Now, in studying a microbial mat from Cone Pool in Mono County, California, scientists have used … an estimated 40 to 80 percent of all the microbial cells on Earth. As microbial predators, viruses are able to …
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Global Diversity and Biogeography of the Zostera marina Mycobiome
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Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio
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Structure, function and diversity of the healthy human microbiome
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Global diversity and biogeography of deep-sea pelagic prokaryotes
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