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High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India
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The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate change … impact of a large-scale heatwave event in the ocean known as “The Blob.” The event was recorded during a long-term … and after The Blob, researchers developed a preliminary model of how marine microbial communities are affected by …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and … participants. One is a fungus (usually belonging to the ascomycetes, one of the two main branches of fungi); another is a photosynthetic microbe, tucked in the … This work was supported by an intramural seed grant (IGSP 2008001) to …
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FICUS-NERSC/KBASE
… Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve … performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems … cycle. All proposals undergo technical review by JGI staff as well as staff at the other participating facilities. …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this … and using engineered biosynthetic pathways and enzyme systems to do synthetic analoging of some really complex … Episode Transcript …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of … and computational resources, respectively. This work was supported by the Office of the Vice President for …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … for studying photosynthesis and cell motility. It’s also a model for studying lipid production in other algae that may …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … structures within cells. This is the largest dataset of its kind ever assembled. The team identified 15 core genes shared across all fungi, and found that some of these genes have moved from …
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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest of plant components … The Impact Traditional methods for breaking down biomass use aerobic methods (those using oxygen) to remove … The authors acknowledge their funding sources: Office of Biological and …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA … important biotechnological applications (e.g., new CRISPR-Cas variants and new CRISPR-Cas types) (Nature Communications …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the … By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, this work … This research was supported by the NSF awards DEB- 1456588 to D.H. and …
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