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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… a team led by researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … team mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the world, … co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and …
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How Filamentous Fungi Sense Food
… of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the … worked with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … genes. This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently …
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MycoCosm Tutorial
Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics … equipped with interactive web-based tools for comparative genomics and community annotation. Presented by Igor Grigoriev, Steven Mondo, Steven …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
Congratulations to Tanja Woyke, who has been awarded the van … around the planet–through techniques including single-cell genomics and metagenomics. They cited her “landmark” 2013 Nature paper , …
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JGI Interns at UC Merced Earn CAMP Merit Awards
As part of the ongoing partnership between DOE JGI and UC Merced to promote … spoke briefly about their internship experiences at the DOE JGI – revisit their videos at …
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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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Meraculous: De Novo Genome Assembly with Short Paired-End Reads
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Complete genome sequence of Ferroglobus placidus AEDII12DO
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Optimizing de novo genome assembly from PCR-amplified metagenomes
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome Institute hosted several UC Merced students … with excitement and determination as they came onsite. From data carpentry to science communications, their schedules … huge amounts of data. I was excited to work on fungal genomics and the fact that I got to do a project involving …
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Game On: High School Students Drive Everglades Metagenomics Study
Metagenome Program Head at the  U.S. Department of Energy (DOE) Joint Genome Institute (JGI) , a DOE Office of Science … through over 55 billion genes and 16 trillion DNA bases of data, to figure out what to study and compare for the … a deeper understanding of both the research process and metagenomics while legitimately contributing to the body of …
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JGI announces second round of 2023 New Investigator awardees
… right: [above] Emma Bell, Mallory Choudoir, Sneha Couvillion, Tobin Hammer, Christina Hazard, Rachel Mackelprang, … Brook Moyers, Mei, Ran,; [below] Benjamin Peterson, Dacheng Ren, Allison Rober, Neal Scott, Chikae Tatsumi, … year we look for novel research projects — aligned with DOE missions and from PIs who have not led any …
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