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Micro-Scale Applications Group
… The JGI provides users access to cutting-edge cell sorting, DNA …
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Defining a Pan-Genome for Antarctic Archaea
… the DOE Joint Genome Institute, a DOE Office of Science User Facility, microbial ecologist Rick Cavicchioli and his … Rauer Islands. Additionally, they compared metagenome data generated from samples collected at four Rauer lakes to … level genomic variation. The genome and metagenome data are available through JGI’s Integrated Microbial …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US … Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering … not only how researchers can successfully partner with DOE user facilities and resources on such large-scale multi-omic …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the microbes that play roles in the methane cycle. Their data report, which provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was published in the …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… related to such aquatic species as diatoms and kelp. Dubbed Phytopthora ramorum (pronounced: Fy-TOFF-thor-uh … in their neighborhoods and nearby forests with the right tools to track infection. The parallel development of the … large-scale “citizen science” project to generate real-time data for modeling and predicting the spread of a plant …
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Single Cell Research Group
… high value to establish models and hypotheses, experimental data is critical to further test such hypotheses. In …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … find genetic regions of interest.” The combination of field data and genetic information has allowed the research team … puzzle with just 50 pieces. The combination of new genetic tools and experimental gardens allow researchers to detect …
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Natural Prodcast Episode 4: Nancy Keller
… Aspergillus was pretty good, but, you know, just from a data standpoint, just figuring out introns and dealing with, … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You … air, email us at [email protected] .    And because we’re a User Facility, if you’re interested in partnering with us, …
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Nigel Mouncey
… and position JGI as a leading integrative genome science user facility.  In addition to serving as JGI Director, Dr. … is also on the Leadership Team of the National Microbiome Data Collaborative and served as President of the Society … of solvent-producing Clostridium species. Scientific Data . 11 Hahnke, R. L. et al. 2022. Expanding the Genomic …
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Benjamin Cole
… Software …
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2022 Progress Report
… Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area … (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence Berkeley National Laboratory … Lab), is to become the leading integrative genome science user facility enabling researchers to solve the world’s …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… it makes its sequencing, synthesis, metabolomics and data analyses capabilities available on a peer-reviewed competitive basis via its  User Programs . Q:  Are applicants outside of JGI eligible … being used to integrate the metabolomics and transcriptomic data? A:  We use MAGI. Reference: Erbiligin et al.  MAGI: A …
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