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Plant Metabolic Network 15: A resource of genome‐wide metabolism databases for 126 plants and algae
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Phage-specific metabolic reprogramming of virocells
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Environment-specific virocell metabolic reprogramming
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2022 Progress Report
DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area …
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Introducing New Members of the JGI User Executive Committee
… in giving a voice to JGI users who feel that certain data sharing policies fail to represent the needs of large … unaware that [public but use-restricted] exist on [the JGI data portal] IMG or how to deal with situations in which … Pawlowska, who studies fungal-bacterial symbiotic systems, noted that she would like to help advance JGI …
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Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… in their neighborhoods and nearby forests with the right tools to track infection. The parallel development of the … large-scale “citizen science” project to generate real-time data for modeling and predicting the spread of a plant … of SOD, the debilitated trees become susceptible to other secondary assaults, such as those posed by bark-boring …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… distribution of these viruses in the various ecosystems, their diversity, their predicted metabolic features … team mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the world, … This can provide short- and long-term impact on host metabolism in general, or on host populations impacted by …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… of topics related to structural biology, single cell and systems biology, omics, and big data science, machine learning for experimental science, … treatment as well as microbial ecology with a focus on metabolism and ecosystem health. To facilitate in-depth …
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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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Learning to Look
… a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to identify a … co-infecting phages and with the host’s CRISPR-Cas immunity systems. Countering Co-Infections, Ensuring Host Survival … of phage-bacterial coevolution and are also useful tools in CRISPR-Cas applications, but we are limited in our …
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Peatland Acidobacteria with a dissimilatory sulfur metabolism
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