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Changing expression patterns of TonB-dependent transporters suggest shifts in polysaccharide consumption over the course of a spring phytoplankton bloom
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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through … accelerate our efforts to characterize poorly-studied algal and viral genomes, and integrate with key DOE Office … activities. Aside from being a key component of the marine food web base, they also feature in many nutrient …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program … bacteria and archaea across Earth’s biomes. Nature 4:1895-1906 Sberro H. et al. 2019 Large-Scale Analyses of Human … ( MetaHIT ); Community Cyber-infrastructure for Advanced Marine Microbial Ecology Research and Analysis ( CAMERA ). … …
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Rex Malmstrom
… genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … not be possible with traditional approaches. … Ph.D. in Marine Biology/Biochemistry, University of Delaware BA in … Theodore Wolf Prize for outstanding dissertation in life sciences 2006 … Education … Selected Publications … …
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Genome sequence of Phaeobacter inhibens type strain (T5T), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 proposals … (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … have been sequenced.  Adriana Lopes dos Santos from Singapore’s Nanyang Technological University aims to generate …
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Simon Roux
… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development … Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in … across Earth’s biomes. Nature Microbiology 4, 1895–1906. Schulz et al., 2020. Giant virus diversity and host …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… millet (Setaria viridis), a small model grass with a short lifecycle that uses a carbon fixation process known as the … Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … because they’re very productive even in high heat while C3 crops have become less efficient at photosynthesis, a …
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Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage
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A Novel Freshwater to Marine Evolutionary Transition Revealed within Methylophilaceae Bacteria from the Arctic Ocean
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Community Structure and Microbial Associations in Sediment-Free Methanotrophic Enrichment Cultures from a Marine Methane Seep
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