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IMA genome-F18
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… of the model plant  Marchantia polymorpha. Commonly known as liverwort, this was done to gain insights into gene … thus allowing them to spread across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. … 35 major evolutionary plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… are present in more than two copies, a condition known as polyploidy. The multiple copies arise from past … each ancestor is called a subgenome. Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, … developed a method to correctly identify polyploid subgenomes without needing to know the genomes of their …
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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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Defining the Sphagnum Core Microbiome across the North American Continent Reveals a Central Role for Diazotrophic Methanotrophs in the Nitrogen and Carbon Cycles of Boreal Peatland Ecosystems
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Single Cell Research Group
… in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … relationships and to provide valuable reference genomes in under-populated areas of the tree of life, as reference genomes are critical to serve as phylogenetic anchors for …
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Analysis of Porphyra Membrane Transporters Demonstrates Gene Transfer among Photosynthetic Eukaryotes and Numerous Sodium-Coupled Transport Systems      
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Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System
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JGIota: The Algae Nicknamed ‘Chlamy’
… is also a faculty scientist in the Environmental Genomics & Systems Biology Division of the Berkeley Lab Biosciences Area.] …
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Frequently Asked Questions: Project Management
… sample and project metadata, and to access JGI tools and systems. … Go to the “ edit contacts ” page in your account. … IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   (citation: … are available for functional annotation/curation of your genomes Microbial (IMG–ER) Metagenome and Single Cell (IMG/ …
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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