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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), comes in. The JGI is uniquely … and construction, providing a unique resource for the international community and fostering academia-industry …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team … sources, these fungi detect which complex chains are available; this information triggers pathways to determine which …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … virus sequences vary widely. In a previous effort, an international consortium recommended specific guidelines and … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), has developed a command-line tool …
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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors with their target genes. The … that can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and potential of … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Transcription factors control …
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi The Science … stable isotope probing (SIP) proved to vastly reduce labor and improve results. Applying this method to the study …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… around the country recognize that crop varieties grow best in certain regions. Most plant species have adapted to their local … decades to develop new crops. One example is an ongoing collaborative effort to improve the emerging bioenergy crop …
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome … Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at … Frontiers in Bioengineering and Biotechnology. 11. 2023 Liu et. al., Bacterial genome editing by coupling …
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JGI Earth Month: Wetlands Work in #TenHundredWords
Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant … was part of the  2018 cohort of the JGI-UC Merced Genomics Internship Program, and is part of  Mark Sistrom’s lab at the UC Merced School of Natural Sciences. The JGI-UC …
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A Shrubbier Version of Rubber
… one tree species: Hevea brasiliensis . It’s great at producing latex that becomes rubber, but it’s vulnerable to disease and climate shifts. So researchers are looking into a desert shrub that’s native to North America: guayule.  This episode was made in collaboration with our friends at the HudsonAlpha Institute for …
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Fungus Fuels Tree Growth
Researchers start pinning down how a fungal symbiont spurs growth of poplar, a … Center for Bioenergy Innovation (CBI) at Oak Ridge National Laboratory. To see how the fungus affected poplar growth, …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, … 2014 to learn more about the microbial responses and feedbacks to warming through the whole soil profile. The goals …
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